Are you getting a check engine light? Have you tried checking for fault codes with an OBD2 scanner?
I have no check engine lights from the AEM. I get a P0420 after cruiseing awhile. But that is because of my lack of cat. I have had that for awhile. I own a OBDII scanner so scanning and watching fuel trims/rpm/load/etc is not a problem.
Before looking at your logs, my guess was that the Subaru ECU might be unhappy since the FIC is altering the Crank signal but not the Cam signal. Some ECUs check the timing between the crank and cam, if they are too far from each other that could indicate detonation. Try connecting the Cam signal to the FIC as well.
I'm leaning towards the crank sensor not being the problem after lots of trouble shooting. I have hooked the crank up many different ways including not even cutting the crank wire, just T'ing it on and it still misses at the same point. I have also hooked the cam/crank up at the same time with the same issue. It idles and cruises great. If you try to go up a hill while cruising it will miss. I have also switched to another engine management that alters the crank and that has no problem with high load and high rpms. I have also hooked that engine management up to feed a perfect signal into the AEM and then the car still misses.
Do you have any issues when free-revving in neutral? Can you get the RPMs above 4000?
I can rev to redline in neutral. I can also do that in first fairly well because there is not enough load. But second-fifth sucks. On a side note the car runs fine up above 4000 rpms. The only problem I have is related to moderate load. It will miss a bunch and then take off with no problems in the upper rpms. Untill I shift then it misses again.
What is your engine setup? Do you have an aftermarket turbo installed?
Engine is stock with an AVO turbo kit. The engine management that came with the kit works fine but I want to go higher boost and I need direct injector control for larger injectors. The 4-5psi it runs now is fun but not fun enough. I also have forged pistons/cams/springs/retainers to go in but I leaving the motor stock until I am happy with the engine management.
On my last impreza I had a emange ultimate hooked up to it that had direct injector control. It worked really well. So I know I will not get a CEL for the injector wires being cut.
Also The car has no problems with the jumper plugged in. Also something even odder, if that is a word. If I disconnect the crank sensor wire to the AEM but leave the AEM and everything else plugged in I have no problems. I of course read no rpms and have no control over anything but I thought this might help in an idea.
I have two more idea to try to narrow down where my problem is coming from. I will connect the crank sensor with the AVO engine management after it as a buffer between it and the stock ecu to see if still misses. My other idea is leave the crank sensor connected to the AEM but the injector wires disconnected. To see if it still misses. Although both ideas don't really help me out in the long run because I need both working without anything in between. If those all fail then my third option is to buy another emanage ultimate because I know it works. But I have AEM EMS's in two other cars and love them so I decided to try more products from you guys. Besides it goes well with the UEGO and AEM boost controler i have to put in the car.